Resolution: 4.19 Å
EM Method: Single-particle
Fitted PDBs: 7a1d
Q-score: 0.281
Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN
Commun Biol (2021) 4 pp. 684-684 [ DOI: doi:10.1038/s42003-021-02222-x Pubmed: 34083757 ]
- Cryo-em map of the large glutamate dehydrogenase composed of 180 kda subunits from mycobacterium smegmatis (open conformation) (705 kDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Nad-specific glutamate dehydrogenase (176 kDa, Protein from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155))
Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN
Commun Biol (2021) 4 pp. 684-684 [ DOI: doi:10.1038/s42003-021-02222-x Pubmed: 34083757 ]
Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN
Commun Biol (2021) 4 pp. 684-684 [ DOI: doi:10.1038/s42003-021-02222-x Pubmed: 34083757 ]
NHEJ Short-range synaptic complex
Resolution: 8.4 Å
EM Method: Single-particle
Fitted PDBs: 7lsy
Q-score: 0.015
Chen S, Lee L, Naila T, Fishbain S, Wang A, Tomkinson AE, Lees-Miller SP, He Y
Nature (2021) 593 pp. 294-298 [ DOI: doi:10.1038/s41586-021-03458-7 Pubmed: 33854234 ]
- Non-homologous end-joining factor 1 (33 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- Short-range synaptic complex of nhej (720 kDa, Complex)
- Dna (26-mer) (7 kDa, DNA from Homo sapiens)
- Dna (5'-d(p*tp*ap*tp*ap*tp*ap*cp*tp*ap*ap*gp*ap*ap*c)-3') (4 kDa, DNA from Homo sapiens)
- Dna ligase 4 (104 kDa, Protein from Homo sapiens)
- Dna repair protein xrcc4 (38 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*cp*ap*ap*tp*gp*ap*ap*ap*cp*gp*gp*ap*ap*cp*ap*gp*tp*cp*ap*g)-3') (6 kDa, DNA from Homo sapiens)
- Dna (26-mer) (7 kDa, DNA from Homo sapiens)
- X-ray repair cross-complementing protein 6 (68 kDa, Protein from Homo sapiens)
- Dna (5'-d(p*gp*tp*tp*cp*tp*tp*ap*gp*tp*ap*tp*ap*tp*a)-3') (4 kDa, DNA from Homo sapiens)
NHEJ Long-range synaptic complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 7lt3
Q-score: 0.118
Chen S, Lee L, Naila T, Fishbain S, Wang A, Tomkinson AE, Lees-Miller SP, He Y
Nature (2021) 593 pp. 294-298 [ DOI: doi:10.1038/s41586-021-03458-7 Pubmed: 33854234 ]
- Long-range synaptic complex of nhej (1 MDa, Complex from Homo sapiens)
- Non-homologous end-joining factor 1 (33 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 5 (82 kDa, Protein from Homo sapiens)
- Dna (31-mer) (9 kDa, DNA from Homo sapiens)
- Dna (30-mer) (9 kDa, DNA from Homo sapiens)
- Dna ligase 4 (104 kDa, Protein from Homo sapiens)
- Dna repair protein xrcc4 (38 kDa, Protein from Homo sapiens)
- X-ray repair cross-complementing protein 6 (69 kDa, Protein from Homo sapiens)
- Dna-dependent protein kinase catalytic subunit (469 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Unknown peptide (1 kDa, Protein from Homo sapiens)
Tak U, Dokland T, Niederweis M
Nat Commun (2021) 12 pp. 394-394 [ Pubmed: 33452244 DOI: doi:10.1038/s41467-020-20533-1 ]
Actin phalloidin at BeFx state
Resolution: 3.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 6u96
Q-score: 0.497
Das S, Ge P, Oztug Durer ZA, Grintsevich EE, Zhou ZH, Reisler E
Structure (2020) 28 pp. 586- [ Pubmed: 32348747 DOI: doi:10.1016/j.str.2020.04.004 ]
- Phalloidin derivative (808 Da, Protein from synthetic construct)
- Actin, alpha skeletal muscle (42 kDa, Protein from Rabbit)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin phalloidin, befx state (Cellular component from Oryctolagus cuniculus)
Alpha Synuclein fibril formed by full length protein - Twister Polymorph
Resolution: 3.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 6cu8
Q-score: 0.423
Li B, Ge P, Murray KA, Sheth P, Zhang M, Nair G, Sawaya MR, Shin WS, Boyer DR, Ye S, Eisenberg DS, Zhou ZH, Jiang L
Nat Commun (2018) 9 pp. 3609-3609 [ DOI: doi:10.1038/s41467-018-05971-2 Pubmed: 30190461 ]
- Alpha-synuclein fibril - twister polymorph (Complex from Homo sapiens)
- Alpha-synuclein (14 kDa, Protein from Homo sapiens)
Resolution: 35.0 Å
EM Method: Single-particle
Fitted PDBs: 6bbp
Q-score: 0.056
Malaby AW, Das S, Chakravarthy S, Irving TC, Bilsel O, Lambright DG
Structure (2018) 26 pp. 106-117.e6 [ DOI: doi:10.1016/j.str.2017.11.019 Pubmed: 29276036 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cytohesin-3,adp-ribosylation factor 6 (60 kDa, Protein from Homo sapiens)
- Truncated monomeric cytohesin-3 (grp1; amino acids 63-399) e161a 6gs arf6 q67l fusion protein complex with gtp, mg and inositol 1,3,4,5 tetrakisphosphate (Complex from Mus musculus)
- Inositol-(1,3,4,5)-tetrakisphosphate (500 Da, Ligand)
Resolution: 35.0 Å
EM Method: Single-particle
Fitted PDBs: 6bbq
Q-score: 0.057
Malaby AW, Das S, Chakravarthy S, Irving TC, Bilsel O, Lambright DG
Structure (2018) 26 pp. 106-117.e6 [ DOI: doi:10.1016/j.str.2017.11.019 Pubmed: 29276036 ]
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cytohesin-3,adp-ribosylation factor 6 (60 kDa, Protein from Homo sapiens)
- Truncated monomeric cytohesin-3 (grp1; amino acids 63-399) e161a 6gs arf6 q67l fusion protein (Complex from Mus musculus)
- Inositol-(1,3,4,5)-tetrakisphosphate (500 Da, Ligand)